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Sunday, February 12, 2012

Here's my weekly evolution column, which appears Monday Feb 13 in the Philadelphia Inquirer:

On Star Trek, the aliens often look so human that crew members fall in love with them. But in real life, scientists in the field known as astrobiology can’t be sure alien life would even be carbon-based like us, or use DNA to carry a genetic code.

Some insight now is coming from earthly labs, where scientists are building alternative kinds of genetic codes, and showing how they can evolve.

Whether life could be built with an alien biochemistry was among the more interesting questions that came up during a public event with famed biologist Richard Dawkins and physicist Lawrence Krauss, author of the book The Physics of Star Trek.

Dawkins saw the question as a biological equivalent of one posed by Einstein: Did God have any choice in making the universe? Not that Einstein believed in a biblical God, as the famously atheistic Dawkins was quick to point out.

Dawkins noted that most of the species that ever existed are now extinct. The way carbon-based life works on Earth is downright wasteful, he said. “Any decent engineer would have sent it back to the shop.”

The event, which drew more than 3,000 people, was held at Arizona State University in Tempe. Dawkins didn’t lecture but instead took part in an onstage discussion with Krauss, who runs a multidisciplinary program there on the origins of humanity, life, and the cosmos.

Krauss — while not going so far as to say alien chicks would be hot — did say the laws of physics and chemistry might favor carbon-based life resembling ours.

Dawkins said he was inclined to think life could exist in more diverse forms, as long as it included some kind of code-carrying system equivalent to DNA, copying itself with high fidelity. Such genetic material is critical for Darwinian evolution, which, to Dawkins and many others, is the defining characteristic of life.

Perhaps it wasn’t a complete coincidence that at the same university, biochemist John Chaput was creating an alternative version of DNA, called TNA, and had last month published the first evidence that the stuff can undergo Darwinian evolution.

Chaput, who works at ASU’s Biodesign Institute, said Dawkins is correct to emphasize the need for genetic material — something that can carry a code. All known life does this with DNA and RNA.

NASA has taken a great interest in such possible alternative code-carriers. In late 2010 the space agency claimed that scientists had forced bacteria to substitute arsenic for phosphorus in its DNA. Despite the fanfare, the team never presented adequate evidence that alternative life really existed, said chemist Steve Benner of the Florida-based Foundation for Applied Molecular Evolution.

And when biochemist Rosemary Redfield of the University of British Columbia tried to replicate this, she discovered that the bacteria failed to grow when fed arsenic and no phosphorus.

Benner said the original arsenic life paper admitted to a small amount of phosphorus contamination. From the start, he said, he thought the contamination was fooling the team into thinking the organism was using arsenic the way we use phosphorus.

Benner said this new TNA work is just as exciting and relevant to astrobiology as the arsenic bacteria would have been if it had been proved.

This alternative genetic material is like RNA in that it’s single-stranded and it carries a chemical code with four different units. But the backbone that holds it together has a different structure, incorporating a sugar called threose where RNA has a sugar called ribose.

Threose is found in meteorites, said Chaput, suggesting it can form spontaneously in the absence of life. It’s also simpler than RNA, making it a reasonable candidate for a precursor to our current genetic material.

The existence of a precursor fits with the widely held view that life didn’t start out as complex as even the simplest microbes today. Instead, the simplest known living things evolved from yet simpler life that no longer exists.

Chaput showed that, like RNA, TNA can undergo Darwinian evolution. In theory, then, life elsewhere could use TNA as its genetic code, and if early life on Earth used it, TNA-based life could evolve into DNA-based life.

To demonstrate TNA evolution, he used selection to prompt the molecules to do a fairly simple task — to stick to a specific protein. This is what so-called receptors do in our bodies. He continued to select those TNA molecules that best stuck to the protein until he had a decent receptor.

TNA evolution worked the same way as in DNA, with accidental mutations leading to variation, and natural selection amplifying those variants that are best at surviving and reproducing themselves. He published the results last month in the journal Nature Chemistry.

That suggests the possibility of TNA-based life elsewhere, said Benner. It’s also possible, he said, that arsenic-using DNA would be stable, say, under the frigid conditions of Saturn’s moon Titan.

So now we have TNA as well as PNA, GNA, FNA and code-carrying molecules that use six or 12 characters rather than the usual four. With these increasing possibilities known, Benner sides more closely with Dawkins on the question of life forms with alternative chemistries.

Our life is not the best of all possible forms, Benner said, but a product of chance, our biochemistry hinging on which molecules happened to bump into each other. God did have alternatives, in other words, but perhaps no power to choose which one would evolve to create works like Star Trek.

Contact staff writer Faye Flam at 215-854-4977, fflam@phillynews.com, on her blog at www.philly.com/evolution, or @fayeflam on Twitter.

Posted by Faye Flam @ 6:59 PM  Permalink | 29 comments
Comments   
  • 0 like this / 0 don't   •   Posted 8:14 PM, 02/12/2012
    ...When will two men be able to procreate?...
    most_of_the_commentors_here_are_losers
  • 0 like this / 0 don't   •   Posted 10:15 PM, 02/12/2012
    Judging from your question and screen name, if you're the intellectual achievement of a man and a woman procreating, I'd say not soon enough.
    Aquanerd09
  • 0 like this / 0 don't   •   Posted 11:01 PM, 02/12/2012
    Is that you, Brian?
    phhht
  • 0 like this / 0 don't   •   Posted 12:20 AM, 02/13/2012
    I hope we find some of these answers while there are still carbon-based forms to carry on the research. It would be ironic if space aliens had to be the paleontologists of our civilization.
    jxxphilly
  • 0 like this / 0 don't   •   Posted 3:13 AM, 02/13/2012
    If the way carbon-based life on earth works is downright wasteful then evolution must be false. It almost has to be. Otherwise, after millions upon millions upon millions of years of evolution, nature would have figured out a way to make it efficient. Discuss.
    journalismIsDead
  • 0 like this / 0 don't   •   Posted 9:22 AM, 02/13/2012
    Why?
    normd
  • 0 like this / 0 don't   •   Posted 5:15 AM, 02/13/2012
    To JiD

    On the contrary, evolution is a process which simply supplies a "good enough" design and has no reason for better. You might expect the best or a perfect design from an Intelligent Designer but not from a blind process with no goals. That may be why humans have decent eyes, but far from the best in the animal world, JiD, as they serve well enough and we survive to procreate and pass on the design. (Think of the many diseases our eyes are prone to, color blindness, the fact that eagles and hawks have much better visual acuity than us, the fact that the retina of our eyes is installed backwards).

    The fact that biological systems are not optimal is evidence that there is no Intelligent Designer and that we are the outcome of a purposeless blind process of random changes between the generations combined with differential reproduction rates. Discuss.
    GaryAllan
  • 0 like this / 0 don't   •   Posted 4:14 AM, 02/16/2012
    I'm not talking about growing a tail so we can be better hunters. I'm talking about basic nature. The need to survive. To procreate. To propogate the species in perpetuity.

    Evolution, nature should have figured out a way to do it by now but instead every species that ever existed is extinct. That's counter intuitive. That's anti-nature, anti-evolution. That just should not happen when our entire being is struggling to go on.

    It sounds like all these carbon based species have been, by design, built with an internal kill switch.
    journalismIsDead
  • 0 like this / 0 don't   •   Posted 11:56 AM, 02/16/2012
    You talk as if Evolution is an actual entity... it's not. It's a process not a person who "figures things out." Since it's a process it's not "conerned" about any individual species and whether they live or die. Your grasp on this concept is lacking in that you assume all species should still be alive if evolution was efficient or real? The reason why 99% of all species are extinct is because species have "evolved" into other species. That's what evolution is!!! You act as if all species were created at exactly the same time and all current life on Earth is what's left. Doesn't that sound bizarre to you? To use your term, evolution "has figured things out" in pretty much the exact way Darwin has suggested in his book... you should read it. Evolution is not linear or whatever else you're trying to say. If you don't accept the theory, we here would love to hear yours?
    Aquanerd09
  • 0 like this / 0 don't   •   Posted 5:45 AM, 02/17/2012
    I made no such observation or statement that I believe all species should be alive because evolution is efficient.

    If, as you say, that 99% of all species are extinct because they have evolved into something else then it seems to me like it was engineered pretty decently.

    And, if evolution is not linear, what is it?
    journalismIsDead
  • 0 like this / 0 don't   •   Posted 8:06 AM, 02/17/2012
    Do you not read this blog? I think the question of evolution as non linear has been answered many times here with Faye. To even think evolution is linear shows your ignorance on the subject. Before you post here again, please read up on science a little more as you are out of your league is this debate. I'm done with these straw mans.
    Aquanerd09
  • 0 like this / 0 don't   •   Posted 3:44 PM, 02/18/2012
    So which is it for you creationists/IDers? "Evolution must be false" or "it was engineered pretty decently?" Pretty typical response from those of your ilk -- "we're against whatever science is for at this moment!" It's a shame you haven't taken more of your energy and used it to educate yourself. Your responses, though, eloquent, are just so much flailing around, trying to find a hook to hang your God hat on.

    Thankfully, (and to this point, at least) in the larger society, the facts and the evidence rule the day... unless, of course, your hero Santorum gets elected.
  • 0 like this / 0 don't   •   Posted 5:49 PM, 02/20/2012
    Yes, Skip, it's called a discussion. It's called asking the question...Is evolution wasteful or beautiful and elegant? I've seen it called both. It can't be both.

    Around May of this we are going to find out that, guess what, Einstein was wrong!!! C has been breached. The experiment to confirm that C has been breached has been concluded at CERN and maybe Fermi (not sure). Oh noes, the holy grail of science has been proven wrong. Now what? Will the universe, as well as all your heads, explode at the same time?
    journalismIsDead
  • 0 like this / 0 don't   •   Posted 5:00 PM, 02/21/2012
    Yes, and with that breach will come new evidence, new insights, new learnings, new theories, and new amazement at the wondrous beauty and intricacy of nature -- all thanks to an accommodating science.

    Here's to your bible following suit.
  • 0 like this / 0 don't   •   Posted 6:35 AM, 02/23/2012
    That's exactly my point in all this discussion on this site. Flam and her apologists will not even entertain that evolution, the big bang and other scientific theories may be wrong or could be proven wrong some day.

    The speed of light, the freaking speed of light has been bested. It's almost unheard of but there it is. A once rock solid number is no more. That's all I'm saying. Maybe a hundred years from now science will be that much more advanced and some glorious egghead will find out that uh-oh evolution may not be the answer we thought it was. The point is, it is not carved in freaking stone like you all want to believe.

    And you should read the New Testament. Some stuff might rub off on you. And did you know one of the greatest scientists of the last century was a Catholic monsignor? Hubble stole all his stuff so you may not have heard of him. ;)
    journalismIsDead


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About Planet of the Apes
Faye Flam - writer
In pursuit of her stories, writer Faye Flam has weathered storms in Greenland, gotten frost nip at the South Pole, and floated weightless aboard NASA’s zero-g plane. She has a degree in geophysics from the California Institute of Technology and started her writing career with the Economist. She later took on the particle physics and cosmology beat at Science Magazine before coming to the Inquirer in 1995. Her previous science column, “Carnal Knowledge,” ran from 2005 to 2008. Her new column and blog, Planet of the Apes, explores the topic of evolution and runs here and in the Inquirer’s health section each Monday. Email Faye at fflam@phillynews.com.

Tony Auth, illustrator
Tony Auth graduated from UCLA with a degree in biological illustration. He was chief medical illustrator at a large teaching hospital in southern California before joining the Inquirer as staff editorial cartoonist in 1971. Like all practicing political cartoonists, he’s gotten more than his share of both awards and hate mail. Over the years Tony has written and/or illustrated eleven children’s books.