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Monday, October 3, 2011
Tony Auth/The Philadelphia Inquirer (tauth@phillynews.com)

Several readers took me to task for defining life as a chemical system capable of undergoing Darwinian evolution. This idea comes from NASA. Since the space agency searches for life in the universe, it needs to agree on a working definition of what it seeks.

The readers questioned whether this is the right definition. Is Darwin's theory really the essence of life?

For this and other such questions, biologists directed me to Jack Szostak, a Harvard professor trying to understand life by re-creating it in a test tube.

That quest also made him ideal to answer a question posed in an earlier column: In the absence of an accepted theory for how life began, are scientists acting on faith to believe in abiogenesis - that life spontaneously emerged from nonlife?

Szostak is in demand, having won the 2009 Nobel Prize in Physiology or Medicine. He shared that prize for work on telomeres - structures in our cells associated with aging.

 Last week I finally intercepted him at Pennsylvania State University, where he was delivering two talks.

In the first, "The Origin of Cellular Life," he noted that astronomers recently estimated our galaxy holds about 500 million other Earth-size planets. How many, if any, harbor life depends on whether forming life is easy or hard.

Szostak hopes to answer that question by starting with some of life's chemical building blocks and coaxing them to form living cells. "Ultimately we want to see the spontaneous emergence of Darwinian evolution," he said.

The first life may not have been as complex as life today. That's important because there's a long-standing misconception that the origin of life was a simultaneous aggregation of cellular machinery, as unlikely as a tornado assembling a 747 from scraps in a junkyard, to use astronomer Fred Hoyle's analogy.

But today scientists don't think it happened all at once. All that's needed are two things, Szostak said. One is a DNA-type molecule that can carry a genetic code and copy itself, but imperfectly. The other is some kind of membrane.

Once you have those elements together, Darwinian evolution can proceed.

In his talk, Szostak showed videos of proto-membranes he made with the help of a graduate student. Though just blobs of fat, they looked alive as they formed spheres, then squashed down into filaments that broke and reassembled themselves as spheres.

All they need to divide this way is a little jostling.

Does evolution define life? Indeed it does, Szostak said, but Darwinian evolution requires a few things beyond just change: a way of making copies with variation from which nature can select; and a way for the variations to be propagated into future generations. Darwinian evolution, he said, is the unifying principle of life.

The consensus is that the first living things did not use DNA for their genetic codes, he said, but they might have used a related code-carrier, RNA, which is made up of a single strand and needs fewer external parts to reproduce itself.

RNA is a long chain of individual links. Each of these links, called ribonucleotides, is formed from several pieces that don't like to stick together, making it hard for scientists to envision how RNA could have formed spontaneously.

Two years ago, biologists in England made some progress by changing the order of assembly. Instead of trying to stick together these two building blocks of RNA, they started with precursors of the building blocks. That worked.

I was also curious about Szostak's response to the abiogenesis question that readers keep posing: Did he have faith that this happened?

He looked puzzled for a moment. "Life wasn't here, and now it is," he said. "It had to have come about by a process."

I said I thought the creationists were accusing the scientists of acting on their own faith to assume it happened without God.

He replied that falling back on a supernatural explanation would be like giving up the inquiry. And there's no reason to give up a problem just because it's hard.

"All we can do is break it down into smaller problems," he said.

Later, Szostak spoke to a biology class taught by Penn State biology professor Andrew Read, after which Read asked a more difficult question:

Even if he does create life in a test tube, how will Szostak know whether his method was the way life originally came about?

The hope, Szostak said, is that some insight will come from answering the more accessible question of how life might spontaneously form.

Maybe the scientists will find there are three or four or 10 ways it can happen, he said, and maybe someday they will have ways to choose the most likely.

And really, even for a guy who already won a Nobel Prize, creating life from chemicals would be a big achievement.

Contact staff writer Faye Flam at 215-854-4977 or fflam@phillynews.com. Read her "Planet of the Apes" blog at www.philly.com/evolution.

Posted by Faye Flam @ 7:46 AM  Permalink | 10 comments
Comments   
  • 0 like this / 0 don't   •   Posted 10:35 AM, 10/03/2011
    I don't understand this debate between creationists and darwinists. It seems to me that it is quite possible that both positions can coexist. The creation of a unique human cell may well have taken place along side the evolution of chemically produced cells. I'm bothered that our teaching institutions do not expose youths to this possibility.
    thooker
  • 0 like this / 0 don't   •   Posted 2:58 PM, 10/03/2011
    @thooker More likely, evolution took place along Darwinian lines, and humans are the latest in a line of successive dominant species. Humans are still apes, albeit highly evolved apes, with a clearly traceable lineage.
    Jeff West
  • 0 like this / 0 don't   •   Posted 3:19 PM, 10/03/2011
    I had to laugh at the line where Szostak looks at you funny when you run our little semantic quibbling by him.

    Creationists and IDers like to lay the "gotcha!" trap for naturalists who dare venture into the less substantiated areas of science and use "faith" or "believe" in a sentence. We down here at the bottom of the page get lost in bickering over things that guys like Szostak don't even waste a brain cell thinking about.
    skipintro
  • 0 like this / 0 don't   •   Posted 1:48 AM, 10/04/2011
    To you creationists: science can't prove God didn't create life...or the universe. It also can't prove God isn't behind the scenes pulling all of Nature's strings. But, see, there's this thing called Occam's Razor you should consider. Also, will you please explain why you seem so sure: 1) God did in fact create life (and whatever else you give him credit for), 2) how you seem to know all the attributes of this God no one's ever seen, i.e., omnipotent, omniscient, etc., and 3) how you'd know the diff. between this alleged real God and an imaginary one. Really, your arguments from ignorance are beyond annoying; I'd say even arrogant. Believe what you like, just keep your faith-based untestable non-hypotheses to yourselves and out of the classroom and esp. the minds of innocent children whose curiosity deserves real, honest answers...like, say, "we don't know" instead of "God did it." If you are so sure you're right then the evidence for your intelligent designer/creater has to show up eventually, and therefore no faith required, right? Otherwise, please keep your faith-based opinions out of the lab, step aside and let the real scientists do their work. Sorry but I am fed up with this ongoing lame tactic by believers to try to gain credibility by attacking science rather than offer up real proof of their own. Thanks.
    mattfoley772
  • 0 like this / 0 don't   •   Posted 3:38 AM, 10/04/2011
    Jeff West writes:
    "More likely, evolution took place along Darwinian lines, and humans are the latest in a line of successive dominant species. Humans are still apes, albeit highly evolved apes, with a clearly traceable lineage."
    Actually, all modern apes are most likely "highly evolved", and, in their own ways, better adapted to their prevailing environment than the common ancestor. Also it is not really appropriate to speak of a "dominant species" except perhaps with respect to our own, which by virtue of the concurrent evolution of technology within the medium of our humungous collective imagination, has enabled some degree of control over a number of other organisms. We are, after all, well embedded and utterly dependent on the complex networks of biology. We would not survive without, for instance, plants, or pollinating insects, or, for that matter, the biota within our guts.
    Furthermore, can usefully regard evolutionary processes as extending beyond biology, a model I expand upon in "The Goldilocks Effect: What Has Serendipity Ever Done For Us?" (free download in e-book formats from the "Unusual Perspectives" website)
    Peter Kinnon
  • 0 like this / 0 don't   •   Posted 4:59 PM, 10/04/2011
    Jack Szostak wins the Nobel Prize in "physiology or medicine," yet his work has almost nothing to do with either science. Ralph Steinman certainly did deserve this year's Nobel in medicine. The Noble committee has given several awards to researchers in origin of life but all their experiments put together prove exactly nothing. Szosak's bias is clear when he says, "life wasn't here and now it is. It had to come about by a process." Then when dealing with how life could have happened here, he goes to 500 million other earth-sized planets as possible sources of life. Szosak's work if anything proves intelligent design (his design in this instance). His work is disassembling and reassembling bacteria in the lab, and he is pretty good at this. Ted
    Ted Siek
  • 0 like this / 0 don't   •   Posted 2:21 AM, 10/05/2011
    It sounds like the conversation was a bit rushed, since assumptions and nuances were not really explored. A Nobel Laureate's time at public events is usually quite limited so this is no surprise, though unfortunate for us who are meeting the good dr. by proxy, as it were.

    For quite some time, Noam Chomsky has been calling out researchers who do not come up with causative theories for phenomena, instead substituting statistical correlations/cluster analysis or alternative mechanisms that "work" but cannot be shown to be the real way things happen. (He has taken artificial intelligence and machine learning, among other fields, to task for this.) I wonder what he would make of Szostak's work, which may find a way to simulate at least one form of abiogenesis but quite possibly not be true for how life began on earth. Part of me says, "Any way you get there is a good way" and another part of me is closer to agreeing with a more purist, this-is-how-it-really-works form of science. The "win" for the purist side is that understanding how things actually work(ed) is an incredibly grounding experience and helps us keep perspective. The "win" for the alternate working mechanism is that we may discover something that is more pragmatic in some regard, such as heavier-than-air flight using exhaust and airfoils rather than frantic wing-flapping and judicious gliding. Which, to circle back around to the original topic, may mean that if we do, indeed, create life from non-life in the lab, we may be able to do it very well, but with unforetold ethical quandaries to wade through. I wonder if Szostak has given any thought to what it would mean, truly mean for society, if he succeeds?
    nerdyseahorse
  • 0 like this / 0 don't   •   Posted 4:10 PM, 10/06/2011
    Actually I had a nice long conversation with Dr. Szostak over dinner, where I was seated next to him. Then I got him alone for an hour at breakfast the next day. The limitation is in the space I got for my column. What nuances or assumptions did you want to explore that weren't explored?
    fayeflam
  • 0 like this / 0 don't   •   Posted 7:14 PM, 10/06/2011
    Faye, thanks for taking my call :). Some questions I would've liked to ask Dr. Szostak:

    - Why does he equate supernatural possibility with an end to scientific inquiry? There are plenty of working scientists who also profess some faith. Science's "problem", if you will, is that it must always be built on base assumptions. Some may quibble with Prime Mover/First Cause arguments, but scientists should give it more than a glance, since we are (apparently) a finite universe with a distinct starting point.

    - A common refrain from ID'ers is that "irreducible complexity" proves that a designer must be in play. I'm not part of the ID crowd, but I do wonder if such issues remain, even with his simplified preconditions for evolution to take over. For example, why should cells that copy themselves (imperfectly or not) ever develop in nature? Does he feel that abiogenesis will be totally explainable with present scientific tools (and brainpower)? Does he see preconditions that will be difficult to explain from known physical principles? (For example, possibly, cells that spontaneously copy themselves?) It is his duty as a scientist to never give up or use an "end stop" explanation (such as supernatural creation) but are there any theoretical gaps that he sees as significant?

    - If he is able to establish a working model of abiogenesis that leads to a pathway that would resemble life on earth, what does he believe he has proven? (This hearkens to the queation that his host asked him in the classroom, and the Chomsky criticism.)

    - What ethical issues does he see with his work? What dangers does he see?

    Thanks...
    nerdyseahorse
  • 0 like this / 0 don't   •   Posted 1:50 AM, 10/16/2011
    So if this guy succeeds, he proves nothing about Origin of Life scenarios because he acts as the Intelligent Designer.

    Ignoring that, his work would be useful to show what the minimum amount of biological systems you would need to get life off the ground. Then, you have to examine them from the perspective of irreducible complexity. Are they even within reach from a step-by-step process?

    So if this Nobel prize winner has to (hypothetically) do a bunch of work to keep system A around so it will work with system B, doesn't that lend credence to Intelligent Design arguments? Yes, you don't think everything happened all at once. But does it *need* to happen all at once. There's the rub. Are you going to assume some biological feature hangs out waiting to be used?

    So as an ID proponent, I fully encourage him to carry on his work.
    geoffrobinson


10 comments
About Planet of the Apes
Faye Flam - writer
In pursuit of her stories, writer Faye Flam has weathered storms in Greenland, gotten frost nip at the South Pole, and floated weightless aboard NASA’s zero-g plane. She has a degree in geophysics from the California Institute of Technology and started her writing career with the Economist. She later took on the particle physics and cosmology beat at Science Magazine before coming to the Inquirer in 1995. Her previous science column, “Carnal Knowledge,” ran from 2005 to 2008. Her new column and blog, Planet of the Apes, explores the topic of evolution and runs here and in the Inquirer’s health section each Monday. Email Faye at fflam@phillynews.com.

Tony Auth, illustrator
Tony Auth graduated from UCLA with a degree in biological illustration. He was chief medical illustrator at a large teaching hospital in southern California before joining the Inquirer as staff editorial cartoonist in 1971. Like all practicing political cartoonists, he’s gotten more than his share of both awards and hate mail. Over the years Tony has written and/or illustrated eleven children’s books.